Aneurysm and Helicobacter pylori relationship: the seropositivity of CagA, VacA and other antigens of Helicobacter pylori in abdominal and ascending aortic aneurysms

Helicobacter pylori is thought to be related to atherosclerosis and aneurysm development. We aimed to detect virulance factors of H. pylori and examine the potential etiopathogenetic relationship between aortic aneurysm and H. pylori, 58 abdominal aortic aneurysm (AAA) and 38 ascending aortic aneurysm (AsAA) cases and 57 Healty control group (HCG) were included. We investigated H. pylori IgG by ELISA and virulance factors by Western-Blot (WB) method. No difference was found between AAA (67.24%), AsAA (73.68%) and HCG (57.89%) for H. pylori IgG (p > 0.05). A significant difference was found between AsAA (78.95%) and HCG (57.89%) for H.pylori IgG (p < 0.05) by ELISA and a significant difference was found only between AsAA (100%) and HCG (37.5%) for H. pylori IgG in the 45-55 age group by WB. A statistically significant difference was found between AAA and AsAA for VacA and CagA + VacA and CagA + VacA + UreA antigens and also a significant difference was found between AsAA and HCG for CagA + UreA antigens (p < 0.05). Finally, we suggest that H. pylori VacA has a more important role than CagA in the development of two aneurysms especially in ruptured AAA. New extended studies detecting H. pylori DNA are needed to detect the aetiopathogenesis between aneurysm types and H. pylori.     

Overexpression of MYC and EZH2 cooperates to epigenetically silence MST1 expression

Hippo-like MST1 protein kinase regulates cell growth, organ size, and carcinogenesis. Reduction or loss of MST1 expression is implicated in poor cancer prognosis. However, the mechanism leading to MST1 silencing remains elusive. Here, we report that both MYC and EZH2 function as potent suppressors of MST1 expression in human prostate cancer cells. We demonstrated that concurrent overexpression of MYC and EZH2 correlated with the reduction or loss of MST1 expression, as shown by RT-qPCR and immunoblotting. Methylation sensitive PCR and bisulfite genomic DNA sequencing showed that DNA methylation caused MST1 silencing. Pharmacologic and RNAi experiments revealed that MYC and EZH2 silenced MST1 expression by inhibiting its promoter activity, and that EZH2 was a mediator of the MYC-induced silencing of MST1. In addition, MYC contributed to MST1 silencing by partly inhibiting the expression of microRNA-26a/b, a negative regulator of EZH2. As shown by ChIP assays, EZH2-induced DNA methylation and H3K27me3 modification, which was accompanied by a reduced H3K4me3 mark and RNA polymerase II occupancy on the MST1 promoter CpG region, were the underlying cause of MST1 silencing. Moreover, potent pharmacologic inhibitors of MYC or EZH2 suppressed prostate cancer cell growth in vitro, and the knockdown of MST1 caused cells’ resistance to MYC and EZH2 inhibitor-induced growth retardation. These findings indicate that MYC, in concert with EZH2, epigenetically attenuates MST1 expression and suggest that the loss of MST1/Hippo functions is critical for the MYC or EZH2 mediation of cancer cell survival.     

Klasea serratuloides subsp. karamanica subsp. nov. (Asteraceae), from the central and south Anatolia transition zone,Turkey

A new subspecies, Klasea serratuloides (DC.) Greuter & Wagenitz subsp. karamanica B. Dogan & A. Duran (Asteraceae), is described and illustrated from Anatolia, Turkey. The subspecies grows on stony places in the Ayranc? and Ermenek district (C4 Karaman Province), Ere?li district (C5 Konya province) and Uluk??la (C5 Ni?de province) in the central and south Anatolia transition zone. It is morphologically similar to K. serratuloides subsp. serratuloides. Diagnostic morphological characters from closely similar taxa are discussed and arranged in a key. Ecology and conservation status of the subspecies is also presented. In addition, the geographical distribution of the new subspecies and other related species is mapped. The pollen morphology and achene surface of K. serratuloides subsp. karamanica and K. serratuloides subsp. serratuloides were examined by SEM.     

Anticandidal activity of hetero-dinuclear copper(II) Mn(II) Schiff base and its potential action of the mechanism

Invasive fungal infections are one of the major challenges especially for immunosuppressed patients since they are drug resistant and pathogen to patients. Therefore, developing new, efficient and nonresistant antifungal agents have been a primary focus of international research. In the current study, a novel Schiff base [hetero-dinuclear copper(II) Mn(II) complex] (SB) derivative was investigated for its anticandidal activity against Candida albicans and possible mechanisms inducing cell death. The results revealed that SB treatment induces apoptotic and necrotic pathways in C. albicans ATCC10231 strain. Intracellular reactive oxygen species production determined by 2′,7′-dichlorofluorescein diacetate staining was triggered by SB and amphotericin B administrations in a dose-dependent manner. Gene expression analysis demonstrated that SB exposure resulted in regulation of critical development and stress related gene expressions. SB treatment directly upregulated expression of stress related genes, DDR48 and RIM101, while suppressed important cell signaling and antibiotic resistance acquiring related genes such as HSP90, ERG11 and EFG1. Furthermore, CaMCA1 mRNA levels were found to be significantly high in SB-treated yeast cells, indicating possible caspase-like mechanism activation. Scanning electron microscopy analysis confirmed that SB treatment led to severe cell wall integrity disruption and wrinkling. The study will encourage development of SB-based anticandidal regimens but further studies are highly warranted to understand limitations and the extended use in the routine.     

Biostimulation of n-Alkane Degradation in Diesel Fuel-Spiked Soils

Nutrient enhancement of bioremediation with nitrogen, namely biostimulation, increases process performance. Selection of a proper nitrogen source is critical for bioremediation applications. In this study, the effects of different nitrogen sources on biodegradation of C₁₀–C₂₅ n-alkane compounds in diesel fuel-spiked soil were revealed, and the most appropriate nitrogen source for biodegradation of semi- and non-volatile n-alkanes was investigated. Bioremediation of diesel fuel contaminated soil was monitored in lab-scale reactors for 15 days. Ammonium sulfate, potassium nitrate and urea were used as nitrogen sources. Carbon dioxide and oxygen levels in the reactors were recorded to monitor microbiological activity. Contaminant removal process was investigated by pH, heterotrophic plate count, total petroleum hydrocarbons (TPH) and C₁₀–C₂₅ n-alkane analyses. First-order kinetic constants were calculated via respirometric and contaminant concentration data. According to total C₁₀–C₂₅ n-alkane removal levels and degradation rate constants, ammonium sulfate addition resulted in the most efficient contaminant removal followed by potassium nitrate and urea. Simultaneous degradation of individual n-alkanes was observed for all of the nitrogen sources. Urea addition changed the distribution of individual n-alkane concentrations relative to the pre-experimental concentrations. Nitrogen source type had no differential effect on degradation rates of semi- (C₁₀–C₁₆) and non-volatile (C₁₇–C₂₅) fractions.     

Jurinea tortumensis sp. nov. (Asteraceae) from northeast Anatolia,Turkey

A new species, Jurinea tortumensis A. Duran & B. Dogan (Asteraceae), is described and illustrated from Anatolia, Turkey. The species grows on serpentine stony places in the Tortum district (Erzurum Province) in northeast Anatolia. It is morphologically similar to J. consanguinea DC. The pollen characteristics and achene surface morphology of J. tortumensis and J. consanguinea are examined by SEM. Diagnostic morphological characters from closely similar taxa are discussed and arranged in a key. Ecology, conservation status and biogeography of the species are also presented. In addition, the geographical distributions of the new species and other related species are mapped.     

Precision genetic modifications: a new era in molecular biology and crop improvement

Recently, the use of programmable DNA-binding proteins such as ZFP/ZFNs, TALE/TALENs and CRISPR/Cas has produced unprecedented advances in gene targeting and genome editing in prokaryotes and eukaryotes. These advances allow researchers to specifically alter genes, reprogram epigenetic marks, generate site-specific deletions and potentially cure diseases. Unlike previous methods, these precision genetic modification techniques (PGMs) are specific, efficient, easy to use and economical. Here we discuss the capabilities and pitfalls of PGMs and highlight the recent, exciting applications of PGMs in molecular biology and crop genetic engineering. Further improvement of the efficiency and precision of PGM techniques will enable researchers to precisely alter gene expression and biological/chemical pathways, probe gene function, modify epigenetic marks and improve crops by increasing yield, quality and tolerance to limiting biotic and abiotic stress conditions.     

Protective effects of resveratrol on hepatic ischemia reperfusion injury in streptozotocin-induced diabetic rats

Molecular and Cellular Biochemistry - Resveratrol (RSV) is a natural polyphenolic compound having antioxidant effects. This study was designed to investigate the protective effects of resveratrol...     

Jurinea cataonica subsp. mardinensis subsp. nov. (Asteraceae) from southeast Anatolia,Turkey

A new subspecies, Jurinea cataonica Boiss. & Hausskn. subsp. mardinensis B. Do?an & A. Duran (Asteraceae), is described and illustrated from Anatolia, Turkey. The subspecies grows on abandoned fields in the Bakirkiri place (C8 Mardin Province) in southeastern Anatolia. It is morphologically similar to J. cataonica subsp. cataonica. Diagnostic morphological characters between these closely similar taxa are discussed and arranged in a key. Ecology and conservation status of the subspecies is also presented. In addition, the geographical distributions of the new subspecies and other related species are given.